On Discovery, we currently have the following databases available for BLAST searches. If you would like additional databases installed, please contact the Research Computing group at Research.Computing@dartmouth.edu
|
DATABASE |
DESCRIPTION |
|---|---|
| est | Expressed sequence tag (EST) sequences from human, mouse, and others |
| est_human | A subset of est, contains human EST sequences |
| est_mouse | A subset of est, contains mouse EST sequences |
| est_others | A subset of est, contains non-human, non-mouse EST sequences |
| nr | Non-redundant protein sequences from Genpept, Swissprot, PIR, PDF, PDB, and NCBI Refseq |
| nt | Partially non-redundant nucleotide sequences from all traditional divisions of Genbank, EMBL, DDBJ (excludes GSS, STS, PAT, EST, HTG, WGS) |
| pataa | Patent protein sequences from USPTO or EPO/JPO via EMBL/DDBJ |
| patnt | Patent nucleotide sequences from USPTO or EPO/JPO via EMBL/DDBJ |
| refseq_genomic | NCBI genomic reference sequences |
| refseq_protein | NCBI protein reference sequences |
| refseq_rna | Expressed sequence tag (EST) sequences from human, mouse, and others |
| swissprot | NCBI transcript reference sequences |